Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Gm31326-201ENSMUST00000191856 1048 ntBASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Cstf1Q99LC2 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Cstf1Q99LC2 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cstf1Q99LC2 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Cstf1Q99LC2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Cstf1Q99LC2 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Cstf1Q99LC2 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Gm6222-201ENSMUST00000120787 396 ntBASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
Cstf1Q99LC2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Ccdc166-201ENSMUST00000182172 2584 ntBASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Gm12960-201ENSMUST00000120017 1066 ntBASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.51□□□□□ -0.09
Cstf1Q99LC2 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm4984-201ENSMUST00000115987 360 ntBASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm9002-201ENSMUST00000178437 499 ntBASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm27631-201ENSMUST00000184163 466 ntBASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm27892-201ENSMUST00000185017 106 ntBASIC14.5□□□□□ -0.09
Cstf1Q99LC2 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 AC165157.4-201ENSMUST00000220587 139 ntBASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Cstf1Q99LC2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms