Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Gm18737-201ENSMUST00000173594 937 ntBASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Ighv8-7-201ENSMUST00000194349 297 ntBASIC17.56■□□□□ 0.4
Brf1Q8CFK2 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Brf1Q8CFK2 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Gm43125-201ENSMUST00000201724 730 ntBASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC17.55■□□□□ 0.4
Brf1Q8CFK2 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gm38225-201ENSMUST00000194001 393 ntBASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Brf1Q8CFK2 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Gm43474-201ENSMUST00000196415 774 ntBASIC17.53■□□□□ 0.4
Brf1Q8CFK2 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Brf1Q8CFK2 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms