Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Rpph1-201ENSMUST00000175096 319 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Mir6956-201ENSMUST00000183598 62 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm44335-201ENSMUST00000196879 141 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm44297-201ENSMUST00000198304 141 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm44346-201ENSMUST00000198851 141 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm43767-201ENSMUST00000198933 381 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 AC158982.1-201ENSMUST00000228377 901 ntBASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Nup88Q8CEC0 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Gm21451-201ENSMUST00000111062 2775 ntBASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Gm13616-201ENSMUST00000120600 222 ntBASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Gm2272-201ENSMUST00000194903 582 ntBASIC17.15■□□□□ 0.34
Nup88Q8CEC0 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Nup88Q8CEC0 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Nup88Q8CEC0 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
Nup88Q8CEC0 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.34
Nup88Q8CEC0 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Gm11745-201ENSMUST00000121669 448 ntBASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Mir6990-201ENSMUST00000183724 91 ntBASIC17.14■□□□□ 0.33
Nup88Q8CEC0 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Nup88Q8CEC0 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nup88Q8CEC0 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.13■□□□□ 0.33
Nup88Q8CEC0 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nup88Q8CEC0 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Nup88Q8CEC0 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms