Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh3rf3Q8C120 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Gm17271-201ENSMUST00000165535 355 ntBASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
Sh3rf3Q8C120 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Gm11594-201ENSMUST00000122313 162 ntBASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh3rf3Q8C120 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Olfr286-202ENSMUST00000205305 969 ntBASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh3rf3Q8C120 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Sh3rf3Q8C120 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms