Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gm44645-201ENSMUST00000205492 1653 ntBASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gm45630-201ENSMUST00000210243 1911 ntBASIC20.44■□□□□ 0.86
Usp47Q8BY87 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gm4204-201ENSMUST00000110798 1231 ntBASIC20.44■□□□□ 0.86
Usp47Q8BY87 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gm15321-201ENSMUST00000121290 288 ntBASIC20.44■□□□□ 0.86
Usp47Q8BY87 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Usp47Q8BY87 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gm13127-201ENSMUST00000118978 1389 ntBASIC20.43■□□□□ 0.86
Usp47Q8BY87 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gm24694-201ENSMUST00000180054 110 ntBASIC20.43■□□□□ 0.86
Usp47Q8BY87 Gm27663-201ENSMUST00000184839 110 ntBASIC20.43■□□□□ 0.86
Usp47Q8BY87 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp47Q8BY87 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Usp47Q8BY87 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Gm27838-201ENSMUST00000184829 128 ntBASIC20.42■□□□□ 0.86
Usp47Q8BY87 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC20.42■□□□□ 0.86
Usp47Q8BY87 AC238811.1-201ENSMUST00000225302 441 ntBASIC20.42■□□□□ 0.86
Usp47Q8BY87 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Gm2423-201ENSMUST00000074863 733 ntBASIC20.42■□□□□ 0.86
Usp47Q8BY87 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp47Q8BY87 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Mir6977-201ENSMUST00000184960 64 ntBASIC20.41■□□□□ 0.86
Usp47Q8BY87 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Gm29667-201ENSMUST00000190817 490 ntBASIC20.41■□□□□ 0.86
Usp47Q8BY87 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 AC121804.3-201ENSMUST00000223420 295 ntBASIC20.41■□□□□ 0.86
Usp47Q8BY87 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Syt7-204ENSMUST00000223586 1344 ntBASIC20.41■□□□□ 0.86
Usp47Q8BY87 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp47Q8BY87 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp47Q8BY87 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms