Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Gm5177-201ENSMUST00000183092 997 ntBASIC14.23□□□□□ -0.13
Six3Q62233 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Six3Q62233 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Six3Q62233 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Six3Q62233 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Six3Q62233 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC14.22□□□□□ -0.13
Six3Q62233 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC14.22□□□□□ -0.13
Six3Q62233 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.22□□□□□ -0.13
Six3Q62233 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC14.22□□□□□ -0.13
Six3Q62233 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.22□□□□□ -0.13
Six3Q62233 Gm16026-204ENSMUST00000162652 683 ntBASIC14.22□□□□□ -0.13
Six3Q62233 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.22□□□□□ -0.13
Six3Q62233 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Six3Q62233 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Six3Q62233 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Six3Q62233 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Six3Q62233 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.21□□□□□ -0.13
Six3Q62233 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Olfr286-202ENSMUST00000205305 969 ntBASIC14.21□□□□□ -0.13
Six3Q62233 Thap2-203ENSMUST00000218989 527 ntBASIC14.21□□□□□ -0.13
Six3Q62233 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Six3Q62233 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.21□□□□□ -0.13
Six3Q62233 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Six3Q62233 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Six3Q62233 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.21□□□□□ -0.13
Six3Q62233 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.21□□□□□ -0.13
Six3Q62233 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.21□□□□□ -0.14
Six3Q62233 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.14
Six3Q62233 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Six3Q62233 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Six3Q62233 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Six3Q62233 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Six3Q62233 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Six3Q62233 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Six3Q62233 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Six3Q62233 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Six3Q62233 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.2□□□□□ -0.14
Six3Q62233 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC14.2□□□□□ -0.14
Six3Q62233 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Six3Q62233 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms