Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Limch1Q3UH68 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.11■□□□□ 0.33
Limch1Q3UH68 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.11■□□□□ 0.33
Limch1Q3UH68 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Limch1Q3UH68 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.1■□□□□ 0.33
Limch1Q3UH68 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm16198-201ENSMUST00000118766 670 ntBASIC17.1■□□□□ 0.33
Limch1Q3UH68 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm16026-204ENSMUST00000162652 683 ntBASIC17.1■□□□□ 0.33
Limch1Q3UH68 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.1■□□□□ 0.33
Limch1Q3UH68 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Limch1Q3UH68 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC17.09■□□□□ 0.33
Limch1Q3UH68 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gm25948-201ENSMUST00000175334 112 ntBASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gm10154-201ENSMUST00000084445 354 ntBASIC17.09■□□□□ 0.33
Limch1Q3UH68 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms