Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Tpm1P58771 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Tpm1P58771 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC16.25■□□□□ 0.19
Tpm1P58771 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Tpm1P58771 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Tpm1P58771 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Tpm1P58771 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Gm27646-201ENSMUST00000183989 110 ntBASIC16.24■□□□□ 0.19
Tpm1P58771 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
Tpm1P58771 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Gm6296-201ENSMUST00000222599 943 ntBASIC16.24■□□□□ 0.19
Tpm1P58771 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.24■□□□□ 0.19
Tpm1P58771 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
Tpm1P58771 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Tpm1P58771 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Tpm1P58771 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Tpm1P58771 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Gm45003-201ENSMUST00000205875 2158 ntBASIC16.23■□□□□ 0.19
Tpm1P58771 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.23■□□□□ 0.19
Tpm1P58771 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Gm12895-201ENSMUST00000122214 226 ntBASIC16.23■□□□□ 0.19
Tpm1P58771 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.23■□□□□ 0.19
Tpm1P58771 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.23■□□□□ 0.19
Tpm1P58771 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Tpm1P58771 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Matn2-206ENSMUST00000228570 2798 ntBASIC16.23■□□□□ 0.19
Tpm1P58771 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Tpm1P58771 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Tpm1P58771 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Tpm1P58771 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Tpm1P58771 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Tpm1P58771 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.23■□□□□ 0.19
Tpm1P58771 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.22■□□□□ 0.19
Tpm1P58771 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Tpm1P58771 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Tpm1P58771 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
Tpm1P58771 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
Tpm1P58771 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Tpm1P58771 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Tpm1P58771 Gm7284-201ENSMUST00000131667 944 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms