Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Rfx1P48377 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Rfx1P48377 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Rfx1P48377 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Rfx1P48377 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 Gm37153-201ENSMUST00000193637 231 ntBASIC17.39■□□□□ 0.37
Rfx1P48377 Gm6089-201ENSMUST00000197666 938 ntBASIC17.39■□□□□ 0.37
Rfx1P48377 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC17.39■□□□□ 0.37
Rfx1P48377 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Rfx1P48377 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Ntrk2-209ENSMUST00000225950 2640 ntBASIC17.38■□□□□ 0.37
Rfx1P48377 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.38■□□□□ 0.37
Rfx1P48377 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Rfx1P48377 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Rfx1P48377 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Rfx1P48377 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Rfx1P48377 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.37■□□□□ 0.37
Rfx1P48377 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC17.37■□□□□ 0.37
Rfx1P48377 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.37■□□□□ 0.37
Rfx1P48377 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.37■□□□□ 0.37
Rfx1P48377 CT010506.4-201ENSMUST00000225457 351 ntBASIC17.37■□□□□ 0.37
Rfx1P48377 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.37■□□□□ 0.37
Rfx1P48377 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Rfx1P48377 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.37■□□□□ 0.37
Rfx1P48377 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC17.36■□□□□ 0.37
Rfx1P48377 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Rfx1P48377 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Rfx1P48377 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Rfx1P48377 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms