Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col2a1P28481 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col2a1P28481 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col2a1P28481 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
Col2a1P28481 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.3■□□□□ 0.2
Col2a1P28481 Gm19078-201ENSMUST00000206311 727 ntBASIC16.3■□□□□ 0.2
Col2a1P28481 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.3■□□□□ 0.2
Col2a1P28481 Mir497b-201ENSMUST00000093601 125 ntBASIC16.3■□□□□ 0.2
Col2a1P28481 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Col2a1P28481 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col2a1P28481 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col2a1P28481 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm11918-201ENSMUST00000121660 179 ntBASIC16.29■□□□□ 0.2
Col2a1P28481 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm26464-201ENSMUST00000157094 305 ntBASIC16.29■□□□□ 0.2
Col2a1P28481 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col2a1P28481 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC16.29■□□□□ 0.2
Col2a1P28481 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col2a1P28481 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 AC126549.2-201ENSMUST00000223997 1976 ntBASIC16.29■□□□□ 0.2
Col2a1P28481 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC16.29■□□□□ 0.2
Col2a1P28481 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.29■□□□□ 0.2
Col2a1P28481 Gm24420-201ENSMUST00000176676 59 ntBASIC16.29■□□□□ 0.2
Col2a1P28481 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col2a1P28481 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col2a1P28481 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.28■□□□□ 0.2
Col2a1P28481 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col2a1P28481 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col2a1P28481 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Gm11478-201ENSMUST00000117851 599 ntBASIC16.28■□□□□ 0.2
Col2a1P28481 Gm11524-201ENSMUST00000119349 807 ntBASIC16.28■□□□□ 0.2
Col2a1P28481 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Gm27772-201ENSMUST00000184900 187 ntBASIC16.28■□□□□ 0.2
Col2a1P28481 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col2a1P28481 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col2a1P28481 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col2a1P28481 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col2a1P28481 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col2a1P28481 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col2a1P28481 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Col2a1P28481 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Col2a1P28481 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC16.27■□□□□ 0.19
Col2a1P28481 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Col2a1P28481 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.27■□□□□ 0.19
Col2a1P28481 Gm2495-201ENSMUST00000191160 466 ntBASIC16.27■□□□□ 0.19
Col2a1P28481 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.27■□□□□ 0.19
Col2a1P28481 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Col2a1P28481 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC16.27■□□□□ 0.19
Col2a1P28481 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Col2a1P28481 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col2a1P28481 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms