Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Hmgb3O54879 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hmgb3O54879 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Mmp14-206ENSMUST00000225641 3238 ntBASIC12.05□□□□□ -0.48
Hmgb3O54879 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hmgb3O54879 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC12.05□□□□□ -0.48
Hmgb3O54879 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 AC166574.6-201ENSMUST00000227889 1806 ntBASIC12.04□□□□□ -0.48
Hmgb3O54879 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.04□□□□□ -0.48
Hmgb3O54879 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.04□□□□□ -0.48
Hmgb3O54879 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC12.04□□□□□ -0.48
Hmgb3O54879 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hmgb3O54879 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Gm8668-201ENSMUST00000120559 1447 ntBASIC12.03□□□□□ -0.48
Hmgb3O54879 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.03□□□□□ -0.48
Hmgb3O54879 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hmgb3O54879 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC12.03□□□□□ -0.48
Hmgb3O54879 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC12.03□□□□□ -0.48
Hmgb3O54879 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms