Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
Col27a1Q5QNQ9 Gm22238-201ENSMUST00000175222 88 ntBASIC22.3■■□□□ 1.16
Col27a1Q5QNQ9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Col27a1Q5QNQ9 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col27a1Q5QNQ9 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Col27a1Q5QNQ9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Col27a1Q5QNQ9 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.29■■□□□ 1.16
Col27a1Q5QNQ9 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Col27a1Q5QNQ9 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Col27a1Q5QNQ9 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Col27a1Q5QNQ9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Col27a1Q5QNQ9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Col27a1Q5QNQ9 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Gm7417-201ENSMUST00000192950 473 ntBASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Col27a1Q5QNQ9 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC22.26■■□□□ 1.15
Col27a1Q5QNQ9 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col27a1Q5QNQ9 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col27a1Q5QNQ9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Col27a1Q5QNQ9 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col27a1Q5QNQ9 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Col27a1Q5QNQ9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC22.24■■□□□ 1.15
Col27a1Q5QNQ9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Col27a1Q5QNQ9 Zxda-201ENSMUST00000117281 2621 ntBASIC22.23■■□□□ 1.15
Col27a1Q5QNQ9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col27a1Q5QNQ9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
Col27a1Q5QNQ9 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col27a1Q5QNQ9 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC22.22■■□□□ 1.15
Col27a1Q5QNQ9 Gm16464-201ENSMUST00000117815 1095 ntBASIC22.22■■□□□ 1.15
Col27a1Q5QNQ9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC22.22■■□□□ 1.15
Col27a1Q5QNQ9 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col27a1Q5QNQ9 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col27a1Q5QNQ9 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col27a1Q5QNQ9 Gm12922-201ENSMUST00000120626 809 ntBASIC22.21■■□□□ 1.15
Col27a1Q5QNQ9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC22.21■■□□□ 1.15
Col27a1Q5QNQ9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Col27a1Q5QNQ9 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Col27a1Q5QNQ9 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC22.2■■□□□ 1.14
Col27a1Q5QNQ9 Appbp2os-202ENSMUST00000206972 447 ntBASIC22.2■■□□□ 1.14
Col27a1Q5QNQ9 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Col27a1Q5QNQ9 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Col27a1Q5QNQ9 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col27a1Q5QNQ9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Col27a1Q5QNQ9 Gm27454-201ENSMUST00000185090 204 ntBASIC22.19■■□□□ 1.14
Col27a1Q5QNQ9 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col27a1Q5QNQ9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col27a1Q5QNQ9 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col27a1Q5QNQ9 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Col27a1Q5QNQ9 Slc35b2-207ENSMUST00000226086 850 ntBASIC22.17■■□□□ 1.14
Col27a1Q5QNQ9 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col27a1Q5QNQ9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC22.17■■□□□ 1.14
Col27a1Q5QNQ9 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.17■■□□□ 1.14
Col27a1Q5QNQ9 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col27a1Q5QNQ9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22.16■■□□□ 1.14
Col27a1Q5QNQ9 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Col27a1Q5QNQ9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC22.15■■□□□ 1.14
Col27a1Q5QNQ9 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Col27a1Q5QNQ9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Col27a1Q5QNQ9 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Col27a1Q5QNQ9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Gm45417-201ENSMUST00000209533 758 ntBASIC22.13■■□□□ 1.13
Col27a1Q5QNQ9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col27a1Q5QNQ9 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col27a1Q5QNQ9 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col27a1Q5QNQ9 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col27a1Q5QNQ9 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC22.12■■□□□ 1.13
Col27a1Q5QNQ9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC22.11■■□□□ 1.13
Col27a1Q5QNQ9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Col27a1Q5QNQ9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Col27a1Q5QNQ9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Col27a1Q5QNQ9 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Col27a1Q5QNQ9 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC22.1■■□□□ 1.13
Col27a1Q5QNQ9 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC22.1■■□□□ 1.13
Col27a1Q5QNQ9 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC22.1■■□□□ 1.13
Col27a1Q5QNQ9 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Col27a1Q5QNQ9 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Col27a1Q5QNQ9 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC22.08■■□□□ 1.12
Col27a1Q5QNQ9 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Col27a1Q5QNQ9 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC22.08■■□□□ 1.12
Col27a1Q5QNQ9 AC140930.3-201ENSMUST00000222935 274 ntBASIC22.08■■□□□ 1.12
Col27a1Q5QNQ9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Col27a1Q5QNQ9 Gm12821-201ENSMUST00000120022 600 ntBASIC22.07■■□□□ 1.12
Col27a1Q5QNQ9 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms