Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.36■■□□□ 1.33
Cxcl12P40224 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC23.36■■□□□ 1.33
Cxcl12P40224 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Cxcl12P40224 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Cxcl12P40224 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC23.35■■□□□ 1.33
Cxcl12P40224 Gm5297-201ENSMUST00000198555 1171 ntBASIC23.35■■□□□ 1.33
Cxcl12P40224 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.35■■□□□ 1.33
Cxcl12P40224 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Cxcl12P40224 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cxcl12P40224 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC23.34■■□□□ 1.33
Cxcl12P40224 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC23.34■■□□□ 1.33
Cxcl12P40224 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cxcl12P40224 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.33■■□□□ 1.33
Cxcl12P40224 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.33■■□□□ 1.33
Cxcl12P40224 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
Cxcl12P40224 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cxcl12P40224 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Cxcl12P40224 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC23.33■■□□□ 1.33
Cxcl12P40224 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Cxcl12P40224 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cxcl12P40224 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Cxcl12P40224 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Cxcl12P40224 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cxcl12P40224 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cxcl12P40224 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Cxcl12P40224 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Cxcl12P40224 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Cxcl12P40224 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC23.31■■□□□ 1.32
Cxcl12P40224 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.31■■□□□ 1.32
Cxcl12P40224 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cxcl12P40224 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.3■■□□□ 1.32
Cxcl12P40224 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Cxcl12P40224 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Cxcl12P40224 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cxcl12P40224 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cxcl12P40224 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cxcl12P40224 Gm21956-201ENSMUST00000179946 522 ntBASIC23.29■■□□□ 1.32
Cxcl12P40224 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cxcl12P40224 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cxcl12P40224 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cxcl12P40224 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
Cxcl12P40224 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Cxcl12P40224 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.27■■□□□ 1.32
Cxcl12P40224 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Cxcl12P40224 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Cxcl12P40224 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Cxcl12P40224 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Cxcl12P40224 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC23.26■■□□□ 1.31
Cxcl12P40224 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC23.26■■□□□ 1.31
Cxcl12P40224 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cxcl12P40224 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cxcl12P40224 Gm22238-201ENSMUST00000175222 88 ntBASIC23.25■■□□□ 1.31
Cxcl12P40224 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC23.25■■□□□ 1.31
Cxcl12P40224 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Cxcl12P40224 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cxcl12P40224 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cxcl12P40224 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cxcl12P40224 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cxcl12P40224 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Cxcl12P40224 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cxcl12P40224 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cxcl12P40224 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC23.23■■□□□ 1.31
Cxcl12P40224 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cxcl12P40224 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cxcl12P40224 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cxcl12P40224 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Cxcl12P40224 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
Cxcl12P40224 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Cxcl12P40224 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC23.21■■□□□ 1.31
Cxcl12P40224 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC23.21■■□□□ 1.31
Cxcl12P40224 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cxcl12P40224 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cxcl12P40224 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cxcl12P40224 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Cxcl12P40224 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cxcl12P40224 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC23.2■■□□□ 1.3
Cxcl12P40224 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cxcl12P40224 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC23.19■■□□□ 1.3
Cxcl12P40224 Appbp2os-202ENSMUST00000206972 447 ntBASIC23.18■■□□□ 1.3
Cxcl12P40224 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC23.18■■□□□ 1.3
Cxcl12P40224 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cxcl12P40224 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cxcl12P40224 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cxcl12P40224 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cxcl12P40224 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cxcl12P40224 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC23.16■■□□□ 1.3
Cxcl12P40224 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cxcl12P40224 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cxcl12P40224 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cxcl12P40224 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.15■■□□□ 1.3
Cxcl12P40224 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.15■■□□□ 1.3
Cxcl12P40224 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.14■■□□□ 1.29
Cxcl12P40224 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Cxcl12P40224 Gm40881-201ENSMUST00000223397 166 ntBASIC23.14■■□□□ 1.29
Cxcl12P40224 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cxcl12P40224 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cxcl12P40224 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.13■■□□□ 1.29
Cxcl12P40224 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cxcl12P40224 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cxcl12P40224 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms