Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Gm5921-201ENSMUST00000075898 882 ntBASIC19.98■□□□□ 0.79
Lmx1bO88609 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Lmx1bO88609 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lmx1bO88609 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lmx1bO88609 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.97■□□□□ 0.79
Lmx1bO88609 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Lmx1bO88609 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lmx1bO88609 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Lmx1bO88609 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lmx1bO88609 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.96■□□□□ 0.79
Lmx1bO88609 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Lmx1bO88609 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lmx1bO88609 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Lmx1bO88609 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lmx1bO88609 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Lmx1bO88609 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lmx1bO88609 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lmx1bO88609 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Lmx1bO88609 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Lmx1bO88609 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lmx1bO88609 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lmx1bO88609 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Lmx1bO88609 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lmx1bO88609 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lmx1bO88609 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lmx1bO88609 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lmx1bO88609 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Lmx1bO88609 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lmx1bO88609 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lmx1bO88609 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lmx1bO88609 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.91■□□□□ 0.78
Lmx1bO88609 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lmx1bO88609 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lmx1bO88609 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Lmx1bO88609 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.9■□□□□ 0.78
Lmx1bO88609 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lmx1bO88609 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.89■□□□□ 0.77
Lmx1bO88609 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.89■□□□□ 0.77
Lmx1bO88609 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Lmx1bO88609 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lmx1bO88609 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lmx1bO88609 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lmx1bO88609 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.88■□□□□ 0.77
Lmx1bO88609 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lmx1bO88609 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.88■□□□□ 0.77
Lmx1bO88609 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.88■□□□□ 0.77
Lmx1bO88609 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lmx1bO88609 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lmx1bO88609 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lmx1bO88609 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lmx1bO88609 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Lmx1bO88609 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.87■□□□□ 0.77
Lmx1bO88609 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lmx1bO88609 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.87■□□□□ 0.77
Lmx1bO88609 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lmx1bO88609 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lmx1bO88609 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Lmx1bO88609 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lmx1bO88609 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Lmx1bO88609 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Lmx1bO88609 Gm5812-201ENSMUST00000061073 957 ntBASIC19.86■□□□□ 0.77
Lmx1bO88609 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lmx1bO88609 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.86■□□□□ 0.77
Lmx1bO88609 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Lmx1bO88609 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.85■□□□□ 0.77
Lmx1bO88609 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Lmx1bO88609 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lmx1bO88609 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Lmx1bO88609 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
Lmx1bO88609 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lmx1bO88609 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lmx1bO88609 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lmx1bO88609 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Lmx1bO88609 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lmx1bO88609 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Lmx1bO88609 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lmx1bO88609 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Lmx1bO88609 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.83■□□□□ 0.77
Lmx1bO88609 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Lmx1bO88609 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Lmx1bO88609 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.83■□□□□ 0.76
Lmx1bO88609 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Lmx1bO88609 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Gm42699-201ENSMUST00000198104 1657 ntBASIC19.82■□□□□ 0.76
Lmx1bO88609 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.82■□□□□ 0.76
Lmx1bO88609 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lmx1bO88609 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms