Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Chd3B1AR17 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Chd3B1AR17 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Chd3B1AR17 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Chd3B1AR17 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Chd3B1AR17 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC21.91■■□□□ 1.1
Chd3B1AR17 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Chd3B1AR17 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Chd3B1AR17 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Chd3B1AR17 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC21.89■■□□□ 1.1
Chd3B1AR17 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC21.89■■□□□ 1.1
Chd3B1AR17 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Chd3B1AR17 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.89■■□□□ 1.09
Chd3B1AR17 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.89■■□□□ 1.09
Chd3B1AR17 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chd3B1AR17 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Chd3B1AR17 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Chd3B1AR17 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.87■■□□□ 1.09
Chd3B1AR17 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Chd3B1AR17 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Chd3B1AR17 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Chd3B1AR17 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Chd3B1AR17 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.84■■□□□ 1.09
Chd3B1AR17 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Chd3B1AR17 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC21.84■■□□□ 1.09
Chd3B1AR17 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Chd3B1AR17 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Chd3B1AR17 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Chd3B1AR17 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.83■■□□□ 1.08
Chd3B1AR17 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Chd3B1AR17 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
Chd3B1AR17 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chd3B1AR17 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chd3B1AR17 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.82■■□□□ 1.08
Chd3B1AR17 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.82■■□□□ 1.08
Chd3B1AR17 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chd3B1AR17 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.81■■□□□ 1.08
Chd3B1AR17 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chd3B1AR17 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.8■■□□□ 1.08
Chd3B1AR17 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
Chd3B1AR17 Gm13238-201ENSMUST00000117655 780 ntBASIC21.8■■□□□ 1.08
Chd3B1AR17 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Chd3B1AR17 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Gm45444-201ENSMUST00000211394 898 ntBASIC21.79■■□□□ 1.08
Chd3B1AR17 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC21.79■■□□□ 1.08
Chd3B1AR17 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Chd3B1AR17 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Chd3B1AR17 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chd3B1AR17 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Chd3B1AR17 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.78■■□□□ 1.08
Chd3B1AR17 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Chd3B1AR17 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Chd3B1AR17 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.77■■□□□ 1.08
Chd3B1AR17 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chd3B1AR17 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chd3B1AR17 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chd3B1AR17 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Chd3B1AR17 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Chd3B1AR17 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chd3B1AR17 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Chd3B1AR17 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chd3B1AR17 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chd3B1AR17 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.75■■□□□ 1.07
Chd3B1AR17 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chd3B1AR17 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Chd3B1AR17 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Chd3B1AR17 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC21.75■■□□□ 1.07
Chd3B1AR17 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chd3B1AR17 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Chd3B1AR17 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Chd3B1AR17 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chd3B1AR17 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.74■■□□□ 1.07
Chd3B1AR17 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chd3B1AR17 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chd3B1AR17 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chd3B1AR17 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.73■■□□□ 1.07
Chd3B1AR17 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.73■■□□□ 1.07
Chd3B1AR17 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chd3B1AR17 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chd3B1AR17 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Chd3B1AR17 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Chd3B1AR17 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 128.7 ms