Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Gm5682-201ENSMUST00000173402 505 ntBASIC14.41□□□□□ -0.1
Lima1Q9ERG0 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Lima1Q9ERG0 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm7222-201ENSMUST00000117512 906 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm11452-201ENSMUST00000122376 690 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm18489-201ENSMUST00000172565 551 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Mir8098-201ENSMUST00000184011 137 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm43767-201ENSMUST00000198933 381 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm5864-201ENSMUST00000202263 970 ntBASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Lima1Q9ERG0 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Gm37153-201ENSMUST00000193637 231 ntBASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.39□□□□□ -0.11
Lima1Q9ERG0 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Lima1Q9ERG0 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms