Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Gm6973-201ENSMUST00000117080 721 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Gm11025-201ENSMUST00000140773 466 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Klk2-ps-201ENSMUST00000205342 571 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ddx56Q9D0R4 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Gm27920-201ENSMUST00000183953 96 ntBASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ddx56Q9D0R4 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm14042-201ENSMUST00000120139 833 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm11543-201ENSMUST00000120758 370 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm37230-201ENSMUST00000194491 818 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Gm45612-201ENSMUST00000211320 160 ntBASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ddx56Q9D0R4 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms