Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm38391-201ENSMUST00000191720 4069 ntBASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm45612-201ENSMUST00000211320 160 ntBASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm45747-201ENSMUST00000212203 999 ntBASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Gm13616-201ENSMUST00000120600 222 ntBASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.31■□□□□ 0.2
Smc1aQ9CU62 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Smc1aQ9CU62 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Gm5312-201ENSMUST00000203728 547 ntBASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms