Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Gm16198-201ENSMUST00000118766 670 ntBASIC14.21□□□□□ -0.13
Msh4Q99MT2 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Msh4Q99MT2 Sorbs3-204ENSMUST00000227929 2460 ntBASIC14.21□□□□□ -0.13
Msh4Q99MT2 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Msh4Q99MT2 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.2□□□□□ -0.14
Msh4Q99MT2 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.2□□□□□ -0.14
Msh4Q99MT2 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Msh4Q99MT2 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.19□□□□□ -0.14
Msh4Q99MT2 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Gm2272-201ENSMUST00000194903 582 ntBASIC14.19□□□□□ -0.14
Msh4Q99MT2 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC14.19□□□□□ -0.14
Msh4Q99MT2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC14.19□□□□□ -0.14
Msh4Q99MT2 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.19□□□□□ -0.14
Msh4Q99MT2 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Msh4Q99MT2 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms