Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm27622-201ENSMUST00000183779 60 ntBASIC16.14■□□□□ 0.17
Trim47Q8C0E3 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm8410-201ENSMUST00000117225 605 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm29310-201ENSMUST00000185468 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21825-201ENSMUST00000185728 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm29109-201ENSMUST00000185895 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21896-201ENSMUST00000186520 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21873-201ENSMUST00000186728 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21794-201ENSMUST00000187056 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21880-201ENSMUST00000187275 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21826-201ENSMUST00000187451 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21198-201ENSMUST00000188393 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21749-201ENSMUST00000189343 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21901-201ENSMUST00000189568 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm29424-201ENSMUST00000189716 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm28599-201ENSMUST00000189838 694 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21867-201ENSMUST00000189917 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm29269-201ENSMUST00000190087 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21722-201ENSMUST00000190153 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm28423-201ENSMUST00000190701 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21899-201ENSMUST00000190745 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21910-201ENSMUST00000191163 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21849-201ENSMUST00000191571 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm28678-201ENSMUST00000191593 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm20910-201ENSMUST00000193268 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm21871-201ENSMUST00000194621 696 ntBASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim47Q8C0E3 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Gm5566-201ENSMUST00000116118 459 ntBASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms