Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.19■□□□□ 0.34
Trim56Q80VI1 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.19■□□□□ 0.34
Trim56Q80VI1 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim56Q80VI1 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.18■□□□□ 0.34
Trim56Q80VI1 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.18■□□□□ 0.34
Trim56Q80VI1 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.18■□□□□ 0.34
Trim56Q80VI1 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.18■□□□□ 0.34
Trim56Q80VI1 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim56Q80VI1 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Gm13223-201ENSMUST00000118609 747 ntBASIC17.17■□□□□ 0.34
Trim56Q80VI1 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim56Q80VI1 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm23547-201ENSMUST00000158210 271 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 AA543401-201ENSMUST00000164248 1269 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm10275-202ENSMUST00000168697 495 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm10275-201ENSMUST00000092620 635 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trim56Q80VI1 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.16■□□□□ 0.34
Trim56Q80VI1 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm5566-201ENSMUST00000116118 459 ntBASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm15920-201ENSMUST00000118998 402 ntBASIC17.15■□□□□ 0.34
Trim56Q80VI1 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm27430-201ENSMUST00000184585 107 ntBASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm44333-201ENSMUST00000197168 107 ntBASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms