Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Gm27989-201ENSMUST00000184721 107 ntBASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Gm44344-201ENSMUST00000200287 129 ntBASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubfd1Q78JW9 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Gm12151-201ENSMUST00000121374 290 ntBASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ubfd1Q78JW9 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm15653-201ENSMUST00000119247 907 ntBASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm27631-201ENSMUST00000184163 466 ntBASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Gm9063-201ENSMUST00000223299 582 ntBASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ubfd1Q78JW9 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ubfd1Q78JW9 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms