Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
Sh3rf1Q69ZI1 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm15358-201ENSMUST00000119249 520 ntBASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm45293-201ENSMUST00000209754 1812 ntBASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm7787-201ENSMUST00000216858 688 ntBASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sh3rf1Q69ZI1 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sh3rf1Q69ZI1 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.77□□□□□ -0.04
Sh3rf1Q69ZI1 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms