Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm43822-201ENSMUST00000200285 476 ntBASIC16.02■□□□□ 0.16
Col11a1Q61245 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC16.02■□□□□ 0.16
Col11a1Q61245 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Col11a1Q61245 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC16.02■□□□□ 0.15
Col11a1Q61245 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Col11a1Q61245 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col11a1Q61245 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col11a1Q61245 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col11a1Q61245 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col11a1Q61245 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col11a1Q61245 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC16.01■□□□□ 0.15
Col11a1Q61245 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Col11a1Q61245 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 AC159196.2-201ENSMUST00000224082 1622 ntBASIC16.01■□□□□ 0.15
Col11a1Q61245 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col11a1Q61245 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Col11a1Q61245 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col11a1Q61245 AC114543.1-201ENSMUST00000226451 1558 ntBASIC16.01■□□□□ 0.15
Col11a1Q61245 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col11a1Q61245 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col11a1Q61245 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
Col11a1Q61245 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Gm12384-201ENSMUST00000119228 919 ntBASIC16■□□□□ 0.15
Col11a1Q61245 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC16■□□□□ 0.15
Col11a1Q61245 Gm29705-201ENSMUST00000212598 474 ntBASIC16■□□□□ 0.15
Col11a1Q61245 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Gm24526-201ENSMUST00000082921 158 ntBASIC16■□□□□ 0.15
Col11a1Q61245 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col11a1Q61245 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col11a1Q61245 AC168058.1-201ENSMUST00000219521 2282 ntBASIC15.99■□□□□ 0.15
Col11a1Q61245 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Mir686-201ENSMUST00000102174 109 ntBASIC15.99■□□□□ 0.15
Col11a1Q61245 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Col11a1Q61245 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Ighv1-62-201ENSMUST00000193406 350 ntBASIC15.99■□□□□ 0.15
Col11a1Q61245 Gm37259-201ENSMUST00000193903 849 ntBASIC15.99■□□□□ 0.15
Col11a1Q61245 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC15.99■□□□□ 0.15
Col11a1Q61245 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col11a1Q61245 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col11a1Q61245 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col11a1Q61245 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.98■□□□□ 0.15
Col11a1Q61245 Gm38223-201ENSMUST00000194484 695 ntBASIC15.98■□□□□ 0.15
Col11a1Q61245 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Col11a1Q61245 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Col11a1Q61245 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Col11a1Q61245 Gm11793-201ENSMUST00000120433 981 ntBASIC15.98■□□□□ 0.15
Col11a1Q61245 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.98■□□□□ 0.15
Col11a1Q61245 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col11a1Q61245 Rn7s1-201ENSMUST00000174924 300 ntBASIC15.98■□□□□ 0.15
Col11a1Q61245 Rn7s2-201ENSMUST00000175032 300 ntBASIC15.98■□□□□ 0.15
Col11a1Q61245 Gm26461-201ENSMUST00000175064 290 ntBASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms