Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ccdc88aQ5SNZ0 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 BC001981-202ENSMUST00000191393 1545 ntBASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm15678-201ENSMUST00000117573 960 ntBASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Mir6392-201ENSMUST00000184924 108 ntBASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ccdc88aQ5SNZ0 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Gm16476-201ENSMUST00000221544 139 ntBASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Mir1897-201ENSMUST00000122581 272 ntBASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Mir125a-201ENSMUST00000083545 68 ntBASIC16.59■□□□□ 0.25
Ccdc88aQ5SNZ0 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ccdc88aQ5SNZ0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
Ccdc88aQ5SNZ0 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Ccdc88aQ5SNZ0 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Ccdc88aQ5SNZ0 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ccdc88aQ5SNZ0 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Gm12960-201ENSMUST00000120017 1066 ntBASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Gm5356-201ENSMUST00000093326 615 ntBASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ccdc88aQ5SNZ0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Gm4984-201ENSMUST00000115987 360 ntBASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 AC123645.1-201ENSMUST00000228469 605 ntBASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Ccdc88aQ5SNZ0 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms