Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Gm18905-201ENSMUST00000205454 928 ntBASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Gm19078-201ENSMUST00000206311 727 ntBASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddb1Q3U1J4 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddb1Q3U1J4 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddb1Q3U1J4 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Ddb1Q3U1J4 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddb1Q3U1J4 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.33■□□□□ 0.53
Ddb1Q3U1J4 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Gm43094-201ENSMUST00000196549 921 ntBASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Gm7172-201ENSMUST00000218047 1152 ntBASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 CT009713.10-202ENSMUST00000225734 696 ntBASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 AC126253.1-201ENSMUST00000227974 824 ntBASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ddb1Q3U1J4 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gm5940-201ENSMUST00000117582 1068 ntBASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gm12329-201ENSMUST00000120829 1007 ntBASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Gm7399-201ENSMUST00000032395 858 ntBASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddb1Q3U1J4 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Gm11524-201ENSMUST00000119349 807 ntBASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Gm42442-201ENSMUST00000197951 1133 ntBASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddb1Q3U1J4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms