Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Col8a1Q00780 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col8a1Q00780 AC153526.5-201ENSMUST00000218661 2147 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm4984-201ENSMUST00000115987 360 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Mir1982-201ENSMUST00000157368 74 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm28760-201ENSMUST00000185995 736 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm43598-201ENSMUST00000202482 2479 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm9797-201ENSMUST00000052902 613 ntBASIC12.41□□□□□ -0.42
Col8a1Q00780 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.41□□□□□ -0.42
Col8a1Q00780 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col8a1Q00780 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm44487-201ENSMUST00000205145 325 ntBASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm45841-201ENSMUST00000207700 164 ntBASIC12.4□□□□□ -0.42
Col8a1Q00780 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.4□□□□□ -0.42
Col8a1Q00780 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Col8a1Q00780 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Col8a1Q00780 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.4□□□□□ -0.43
Col8a1Q00780 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Col8a1Q00780 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Col8a1Q00780 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC12.39□□□□□ -0.43
Col8a1Q00780 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Prob1-201ENSMUST00000097619 3021 ntBASIC12.39□□□□□ -0.43
Col8a1Q00780 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col8a1Q00780 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
Col8a1Q00780 Gm15593-201ENSMUST00000122085 1008 ntBASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms