Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm20910-201ENSMUST00000193268 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21871-201ENSMUST00000194621 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm46209-201ENSMUST00000217912 553 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Trav13-3-201ENSMUST00000117226 336 ntBASIC12.57□□□□□ -0.4
Nkx3-1P97436 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gm6222-201ENSMUST00000120787 396 ntBASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gm15321-201ENSMUST00000121290 288 ntBASIC12.57□□□□□ -0.4
Nkx3-1P97436 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.57□□□□□ -0.4
Nkx3-1P97436 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gm43195-201ENSMUST00000200614 2332 ntBASIC12.57□□□□□ -0.4
Nkx3-1P97436 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Nkx3-1P97436 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm15653-201ENSMUST00000119247 907 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm24694-201ENSMUST00000180054 110 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm4691-201ENSMUST00000182339 1000 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm27663-201ENSMUST00000184839 110 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm29667-201ENSMUST00000190817 490 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm2451-201ENSMUST00000199447 999 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm10290-201ENSMUST00000200451 999 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm16476-201ENSMUST00000221544 139 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Gm42901-201ENSMUST00000197735 3171 ntBASIC12.56□□□□□ -0.4
Nkx3-1P97436 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Nkx3-1P97436 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms