Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Rfx1P48377 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Rfx1P48377 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Rfx1P48377 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.43■□□□□ 0.38
Rfx1P48377 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Rfx1P48377 Gm7977-201ENSMUST00000193787 748 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44357-201ENSMUST00000195897 142 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm19658-201ENSMUST00000196231 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44367-201ENSMUST00000196836 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44350-201ENSMUST00000197197 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44390-201ENSMUST00000197533 144 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44313-201ENSMUST00000198018 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44486-201ENSMUST00000198508 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44314-201ENSMUST00000199263 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44394-201ENSMUST00000199558 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44484-201ENSMUST00000199873 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44466-201ENSMUST00000200264 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Gm44359-201ENSMUST00000200671 138 ntBASIC17.43■□□□□ 0.38
Rfx1P48377 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.43■□□□□ 0.38
Rfx1P48377 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Rfx1P48377 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rfx1P48377 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Rfx1P48377 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.42■□□□□ 0.38
Rfx1P48377 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.42■□□□□ 0.38
Rfx1P48377 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.42■□□□□ 0.38
Rfx1P48377 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.42■□□□□ 0.38
Rfx1P48377 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC17.42■□□□□ 0.38
Rfx1P48377 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC17.42■□□□□ 0.38
Rfx1P48377 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Rfx1P48377 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rfx1P48377 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC17.41■□□□□ 0.38
Rfx1P48377 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.41■□□□□ 0.38
Rfx1P48377 Gm17807-201ENSMUST00000186869 298 ntBASIC17.41■□□□□ 0.38
Rfx1P48377 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Rfx1P48377 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Gm42471-201ENSMUST00000201457 1865 ntBASIC17.41■□□□□ 0.38
Rfx1P48377 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Rfx1P48377 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rfx1P48377 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC17.41■□□□□ 0.38
Rfx1P48377 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gm14859-201ENSMUST00000117752 357 ntBASIC17.4■□□□□ 0.38
Rfx1P48377 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Rfx1P48377 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.4■□□□□ 0.38
Rfx1P48377 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.4■□□□□ 0.38
Rfx1P48377 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 CT030684.3-201ENSMUST00000227308 2445 ntBASIC17.4■□□□□ 0.38
Rfx1P48377 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.4■□□□□ 0.38
Rfx1P48377 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rfx1P48377 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms