Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Col3a1P08121 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Col3a1P08121 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col3a1P08121 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Gm15222-202ENSMUST00000228667 1726 ntBASIC17.21■□□□□ 0.35
Col3a1P08121 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Gm4804-201ENSMUST00000182234 999 ntBASIC17.21■□□□□ 0.35
Col3a1P08121 Gm37714-201ENSMUST00000194742 342 ntBASIC17.21■□□□□ 0.35
Col3a1P08121 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col3a1P08121 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Col3a1P08121 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col3a1P08121 Gm15678-201ENSMUST00000117573 960 ntBASIC17.2■□□□□ 0.34
Col3a1P08121 Gm5279-201ENSMUST00000199575 745 ntBASIC17.2■□□□□ 0.34
Col3a1P08121 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Col3a1P08121 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.2■□□□□ 0.34
Col3a1P08121 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Col3a1P08121 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col3a1P08121 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col3a1P08121 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col3a1P08121 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col3a1P08121 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col3a1P08121 Gm7558-201ENSMUST00000193221 1165 ntBASIC17.19■□□□□ 0.34
Col3a1P08121 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 AC162801.1-201ENSMUST00000220612 198 ntBASIC17.19■□□□□ 0.34
Col3a1P08121 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Col3a1P08121 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.19■□□□□ 0.34
Col3a1P08121 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col3a1P08121 Gm9109-201ENSMUST00000120254 1405 ntBASIC17.19■□□□□ 0.34
Col3a1P08121 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Gm9115-201ENSMUST00000120192 1348 ntBASIC17.18■□□□□ 0.34
Col3a1P08121 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.18■□□□□ 0.34
Col3a1P08121 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col3a1P08121 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col3a1P08121 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Gm9908-201ENSMUST00000211534 448 ntBASIC17.18■□□□□ 0.34
Col3a1P08121 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC17.18■□□□□ 0.34
Col3a1P08121 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.18■□□□□ 0.34
Col3a1P08121 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Col3a1P08121 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.18■□□□□ 0.34
Col3a1P08121 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC17.18■□□□□ 0.34
Col3a1P08121 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Col3a1P08121 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Gm45384-201ENSMUST00000210451 277 ntBASIC17.18■□□□□ 0.34
Col3a1P08121 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col3a1P08121 Gm42690-201ENSMUST00000197921 1836 ntBASIC17.17■□□□□ 0.34
Col3a1P08121 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC17.17■□□□□ 0.34
Col3a1P08121 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms