Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.28□□□□□ -0.12
Cbx4O55187 Olfr286-202ENSMUST00000205305 969 ntBASIC14.28□□□□□ -0.12
Cbx4O55187 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.28□□□□□ -0.12
Cbx4O55187 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.28□□□□□ -0.12
Cbx4O55187 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Cbx4O55187 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Cbx4O55187 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Cbx4O55187 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.27□□□□□ -0.12
Cbx4O55187 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Cbx4O55187 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Cbx4O55187 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Cbx4O55187 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC14.27□□□□□ -0.12
Cbx4O55187 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Gm15427-201ENSMUST00000117288 531 ntBASIC14.27□□□□□ -0.13
Cbx4O55187 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.27□□□□□ -0.13
Cbx4O55187 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Cbx4O55187 Gm37935-201ENSMUST00000192012 982 ntBASIC14.27□□□□□ -0.13
Cbx4O55187 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
Cbx4O55187 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Cbx4O55187 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Cbx4O55187 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC14.26□□□□□ -0.13
Cbx4O55187 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cbx4O55187 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.26□□□□□ -0.13
Cbx4O55187 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.26□□□□□ -0.13
Cbx4O55187 Gm17271-201ENSMUST00000165535 355 ntBASIC14.26□□□□□ -0.13
Cbx4O55187 Rpph1-201ENSMUST00000175096 319 ntBASIC14.26□□□□□ -0.13
Cbx4O55187 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14.26□□□□□ -0.13
Cbx4O55187 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC14.26□□□□□ -0.13
Cbx4O55187 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC14.26□□□□□ -0.13
Cbx4O55187 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14.26□□□□□ -0.13
Cbx4O55187 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cbx4O55187 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Cbx4O55187 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Cbx4O55187 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Cbx4O55187 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Cbx4O55187 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Cbx4O55187 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Cbx4O55187 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms