Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC13.9□□□□□ -0.18
Clk3O35492 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.9□□□□□ -0.18
Clk3O35492 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC13.9□□□□□ -0.18
Clk3O35492 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.9□□□□□ -0.18
Clk3O35492 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Clk3O35492 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.89□□□□□ -0.19
Clk3O35492 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Clk3O35492 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC13.89□□□□□ -0.19
Clk3O35492 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.89□□□□□ -0.19
Clk3O35492 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC13.89□□□□□ -0.19
Clk3O35492 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.89□□□□□ -0.19
Clk3O35492 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.89□□□□□ -0.19
Clk3O35492 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Clk3O35492 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.88□□□□□ -0.19
Clk3O35492 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Clk3O35492 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC13.88□□□□□ -0.19
Clk3O35492 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Clk3O35492 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Clk3O35492 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.88□□□□□ -0.19
Clk3O35492 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.88□□□□□ -0.19
Clk3O35492 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Clk3O35492 Gm45293-201ENSMUST00000209754 1812 ntBASIC13.87□□□□□ -0.19
Clk3O35492 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Celf4-206ENSMUST00000224553 1729 ntBASIC13.87□□□□□ -0.19
Clk3O35492 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Gm4899-201ENSMUST00000178708 719 ntBASIC13.87□□□□□ -0.19
Clk3O35492 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC13.87□□□□□ -0.19
Clk3O35492 AC084391.1-201ENSMUST00000200651 141 ntBASIC13.87□□□□□ -0.19
Clk3O35492 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Clk3O35492 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 108.3 ms