Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Chd3B1AR17 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Chd3B1AR17 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Chd3B1AR17 Gm12151-201ENSMUST00000121374 290 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Chd3B1AR17 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Gm33320-201ENSMUST00000192232 530 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Mir125a-201ENSMUST00000083545 68 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Chd3B1AR17 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Chd3B1AR17 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Gm29667-201ENSMUST00000190817 490 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 Gm44855-201ENSMUST00000205725 362 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 AC121598.1-201ENSMUST00000228224 1019 ntBASIC14.26□□□□□ -0.13
Chd3B1AR17 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Chd3B1AR17 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Chd3B1AR17 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.25□□□□□ -0.13
Chd3B1AR17 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC14.25□□□□□ -0.13
Chd3B1AR17 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.25□□□□□ -0.13
Chd3B1AR17 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Chd3B1AR17 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.24□□□□□ -0.13
Chd3B1AR17 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Chd3B1AR17 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.24□□□□□ -0.13
Chd3B1AR17 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC14.24□□□□□ -0.13
Chd3B1AR17 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
Chd3B1AR17 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.24□□□□□ -0.13
Chd3B1AR17 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Chd3B1AR17 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Chd3B1AR17 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.24□□□□□ -0.13
Chd3B1AR17 Cd63-ps-201ENSMUST00000145417 875 ntBASIC14.24□□□□□ -0.13
Chd3B1AR17 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms