Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Gm18584-201ENSMUST00000203098 964 ntBASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn4aQ9ER60 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn4aQ9ER60 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm7809-201ENSMUST00000153199 742 ntBASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm45770-201ENSMUST00000212105 616 ntBASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm19208-201ENSMUST00000213861 912 ntBASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn4aQ9ER60 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Gm3890-201ENSMUST00000182416 207 ntBASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Gm44545-201ENSMUST00000208262 746 ntBASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn4aQ9ER60 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Gm13123-201ENSMUST00000122173 492 ntBASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn4aQ9ER60 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm11557-201ENSMUST00000120200 1008 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 n-R5s14-201ENSMUST00000122688 107 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm8927-201ENSMUST00000181978 981 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm44126-201ENSMUST00000204831 514 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm21009-201ENSMUST00000197169 1669 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 AC168058.1-201ENSMUST00000219521 2282 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Ighv1-51-201ENSMUST00000192903 354 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Gm37835-201ENSMUST00000193305 361 ntBASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn4aQ9ER60 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms