Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Mir6956-201ENSMUST00000183598 62 ntBASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Gm27301-201ENSMUST00000184012 127 ntBASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Smc1aQ9CU62 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Smc1aQ9CU62 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.33■□□□□ 0.21
Smc1aQ9CU62 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Gm15427-201ENSMUST00000117288 531 ntBASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 AC139382.1-201ENSMUST00000221402 498 ntBASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Smc1aQ9CU62 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.32■□□□□ 0.2
Smc1aQ9CU62 Gm5177-201ENSMUST00000183092 997 ntBASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms