Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Gm22175-201ENSMUST00000175007 78 ntBASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gm13464-201ENSMUST00000119418 935 ntBASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.35■□□□□ 0.21
Ushbp1Q8R370 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm16198-201ENSMUST00000118766 670 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm9726-201ENSMUST00000180321 678 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm8597-201ENSMUST00000191525 1109 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm44645-201ENSMUST00000205492 1653 ntBASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ushbp1Q8R370 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.33■□□□□ 0.21
Ushbp1Q8R370 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ushbp1Q8R370 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ushbp1Q8R370 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ushbp1Q8R370 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms