Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nup88Q8CEC0 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Gm12008-201ENSMUST00000117791 755 ntBASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Gm18246-201ENSMUST00000221023 728 ntBASIC17.24■□□□□ 0.35
Nup88Q8CEC0 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nup88Q8CEC0 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.24■□□□□ 0.35
Nup88Q8CEC0 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Thap2-203ENSMUST00000218989 527 ntBASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Nup88Q8CEC0 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Gm10313-201ENSMUST00000095320 1002 ntBASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nup88Q8CEC0 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Gm13365-201ENSMUST00000121188 973 ntBASIC17.21■□□□□ 0.35
Nup88Q8CEC0 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nup88Q8CEC0 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms