Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm9794-201ENSMUST00000202370 423 ntBASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Gm7653-201ENSMUST00000214567 508 ntBASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Gm13034-201ENSMUST00000121342 3177 ntBASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Usp40Q8BWR4 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Carlr-201ENSMUST00000181515 2574 ntBASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Efs-202ENSMUST00000227037 2540 ntBASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp40Q8BWR4 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm12490-201ENSMUST00000120255 560 ntBASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm33320-201ENSMUST00000192232 530 ntBASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm10766-202ENSMUST00000194123 606 ntBASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC19.93■□□□□ 0.78
Usp40Q8BWR4 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Gm15460-201ENSMUST00000118147 391 ntBASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp40Q8BWR4 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC19.91■□□□□ 0.78
Usp40Q8BWR4 AC154846.1-201ENSMUST00000226278 862 ntBASIC19.91■□□□□ 0.78
Usp40Q8BWR4 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms