Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm15371-201ENSMUST00000117057 784 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm13886-201ENSMUST00000117876 1183 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm5687-201ENSMUST00000118252 640 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12616-201ENSMUST00000118594 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm11667-201ENSMUST00000119828 486 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm8194-201ENSMUST00000159783 859 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12624-201ENSMUST00000177615 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12621-201ENSMUST00000177760 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12615-201ENSMUST00000177970 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12622-201ENSMUST00000177975 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12627-201ENSMUST00000178412 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12625-201ENSMUST00000179122 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12614-201ENSMUST00000179586 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm12613-201ENSMUST00000180323 382 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm8862-201ENSMUST00000198379 1346 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Col7a1Q63870 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col7a1Q63870 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.8□□□□□ -0.52
Col7a1Q63870 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Col7a1Q63870 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Gm43081-201ENSMUST00000199082 1380 ntBASIC11.79□□□□□ -0.52
Col7a1Q63870 Gm37015-201ENSMUST00000192763 1521 ntBASIC11.79□□□□□ -0.52
Col7a1Q63870 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC11.79□□□□□ -0.52
Col7a1Q63870 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.79□□□□□ -0.52
Col7a1Q63870 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Col7a1Q63870 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col7a1Q63870 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm24830-201ENSMUST00000102024 166 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm12485-201ENSMUST00000119641 291 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC11.78□□□□□ -0.52
Col7a1Q63870 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm25890-201ENSMUST00000177643 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm22614-201ENSMUST00000178300 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm22042-201ENSMUST00000082989 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm26232-201ENSMUST00000083360 166 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm24136-201ENSMUST00000083374 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm26110-201ENSMUST00000083971 165 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Gm44100-201ENSMUST00000204329 436 ntBASIC11.78□□□□□ -0.52
Col7a1Q63870 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col7a1Q63870 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Col7a1Q63870 Prob1-201ENSMUST00000097619 3021 ntBASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms