Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.64□□□□□ -0.23
ShhQ62226 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.64□□□□□ -0.23
ShhQ62226 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.64□□□□□ -0.23
ShhQ62226 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
ShhQ62226 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Gm45133-201ENSMUST00000207548 2773 ntBASIC13.63□□□□□ -0.23
ShhQ62226 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.63□□□□□ -0.23
ShhQ62226 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.63□□□□□ -0.23
ShhQ62226 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.63□□□□□ -0.23
ShhQ62226 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Gm18057-201ENSMUST00000208220 503 ntBASIC13.63□□□□□ -0.23
ShhQ62226 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.63□□□□□ -0.23
ShhQ62226 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.63□□□□□ -0.23
ShhQ62226 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
ShhQ62226 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.63□□□□□ -0.23
ShhQ62226 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
ShhQ62226 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
ShhQ62226 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.63□□□□□ -0.23
ShhQ62226 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ShhQ62226 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.63□□□□□ -0.23
ShhQ62226 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.63□□□□□ -0.23
ShhQ62226 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC13.62□□□□□ -0.23
ShhQ62226 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.62□□□□□ -0.23
ShhQ62226 Wdyhv1-203ENSMUST00000226889 394 ntBASIC13.62□□□□□ -0.23
ShhQ62226 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Gm2423-201ENSMUST00000074863 733 ntBASIC13.62□□□□□ -0.23
ShhQ62226 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
ShhQ62226 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.62□□□□□ -0.23
ShhQ62226 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ShhQ62226 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC13.62□□□□□ -0.23
ShhQ62226 Celf4-206ENSMUST00000224553 1729 ntBASIC13.61□□□□□ -0.23
ShhQ62226 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ShhQ62226 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ShhQ62226 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms