Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Prob1-201ENSMUST00000097619 3021 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm12203-201ENSMUST00000118235 598 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm12209-201ENSMUST00000120089 596 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Gm38671-201ENSMUST00000200573 130 ntBASIC16.05■□□□□ 0.16
Col11a1Q61245 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC16.05■□□□□ 0.16
Col11a1Q61245 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Col11a1Q61245 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Col11a1Q61245 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.04■□□□□ 0.16
Col11a1Q61245 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Col11a1Q61245 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Col11a1Q61245 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Col11a1Q61245 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.04■□□□□ 0.16
Col11a1Q61245 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC16.04■□□□□ 0.16
Col11a1Q61245 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.04■□□□□ 0.16
Col11a1Q61245 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Col11a1Q61245 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Col11a1Q61245 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm7584-201ENSMUST00000175829 940 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm2639-201ENSMUST00000156881 1297 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Gm4271-201ENSMUST00000174444 973 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Mir3547-201ENSMUST00000175461 88 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC16.03■□□□□ 0.16
Col11a1Q61245 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 AC140406.1-201ENSMUST00000226481 465 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col11a1Q61245 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.03■□□□□ 0.16
Col11a1Q61245 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Col11a1Q61245 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Col11a1Q61245 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Col11a1Q61245 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.02■□□□□ 0.16
Col11a1Q61245 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC16.02■□□□□ 0.16
Col11a1Q61245 Gm38341-201ENSMUST00000195357 515 ntBASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms