Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Gm2272-201ENSMUST00000194903 582 ntBASIC17.18■□□□□ 0.34
Limch1Q3UH68 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.18■□□□□ 0.34
Limch1Q3UH68 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Limch1Q3UH68 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.17■□□□□ 0.34
Limch1Q3UH68 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.17■□□□□ 0.34
Limch1Q3UH68 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Limch1Q3UH68 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm20553-201ENSMUST00000204205 844 ntBASIC17.16■□□□□ 0.34
Limch1Q3UH68 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Limch1Q3UH68 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Gm8749-201ENSMUST00000117737 331 ntBASIC17.15■□□□□ 0.34
Limch1Q3UH68 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.15■□□□□ 0.34
Limch1Q3UH68 Mir6990-201ENSMUST00000183724 91 ntBASIC17.15■□□□□ 0.34
Limch1Q3UH68 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.15■□□□□ 0.34
Limch1Q3UH68 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Limch1Q3UH68 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms