Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdx2P43241 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Cdx2P43241 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
Cdx2P43241 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdx2P43241 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdx2P43241 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdx2P43241 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.82□□□□□ -0.2
Cdx2P43241 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdx2P43241 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.2
Cdx2P43241 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdx2P43241 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdx2P43241 Gm15460-201ENSMUST00000118147 391 ntBASIC13.81□□□□□ -0.2
Cdx2P43241 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.81□□□□□ -0.2
Cdx2P43241 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.81□□□□□ -0.2
Cdx2P43241 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdx2P43241 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdx2P43241 Gm17150-201ENSMUST00000165577 381 ntBASIC13.81□□□□□ -0.2
Cdx2P43241 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdx2P43241 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.81□□□□□ -0.2
Cdx2P43241 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdx2P43241 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdx2P43241 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Cdx2P43241 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx2P43241 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Cdx2P43241 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdx2P43241 Gm9867-201ENSMUST00000192212 2647 ntBASIC13.8□□□□□ -0.2
Cdx2P43241 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdx2P43241 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Ighv1-25-201ENSMUST00000195638 345 ntBASIC13.8□□□□□ -0.2
Cdx2P43241 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.8□□□□□ -0.2
Cdx2P43241 AC121598.1-201ENSMUST00000228224 1019 ntBASIC13.8□□□□□ -0.2
Cdx2P43241 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdx2P43241 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Cdx2P43241 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Gm11839-201ENSMUST00000120647 1953 ntBASIC13.8□□□□□ -0.2
Cdx2P43241 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx2P43241 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cdx2P43241 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.79□□□□□ -0.2
Cdx2P43241 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Gm43352-201ENSMUST00000196419 3065 ntBASIC13.79□□□□□ -0.2
Cdx2P43241 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Cdx2P43241 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Cdx2P43241 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC13.79□□□□□ -0.2
Cdx2P43241 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.79□□□□□ -0.2
Cdx2P43241 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13.79□□□□□ -0.2
Cdx2P43241 AC139580.1-202ENSMUST00000223574 928 ntBASIC13.79□□□□□ -0.2
Cdx2P43241 AC123645.1-201ENSMUST00000228469 605 ntBASIC13.79□□□□□ -0.2
Cdx2P43241 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cdx2P43241 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC13.79□□□□□ -0.2
Cdx2P43241 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx2P43241 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx2P43241 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx2P43241 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx2P43241 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx2P43241 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms