Protein–RNA interactions for Protein: P29533

Vcam1, Vascular cell adhesion protein 1, mousemouse

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcam1P29533 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vcam1P29533 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.72■□□□□ 0.27
Vcam1P29533 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vcam1P29533 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vcam1P29533 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vcam1P29533 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vcam1P29533 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
Vcam1P29533 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Vcam1P29533 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Vcam1P29533 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Vcam1P29533 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Vcam1P29533 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.71■□□□□ 0.27
Vcam1P29533 Ighv1-25-201ENSMUST00000195638 345 ntBASIC16.71■□□□□ 0.27
Vcam1P29533 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.71■□□□□ 0.27
Vcam1P29533 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Vcam1P29533 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Vcam1P29533 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vcam1P29533 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vcam1P29533 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vcam1P29533 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vcam1P29533 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vcam1P29533 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Gm15957-201ENSMUST00000118893 974 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.7■□□□□ 0.26
Vcam1P29533 Gm23984-201ENSMUST00000157139 203 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 Gm28760-201ENSMUST00000185995 736 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Gm45668-201ENSMUST00000211271 493 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.7■□□□□ 0.26
Vcam1P29533 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.7■□□□□ 0.26
Vcam1P29533 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC16.7■□□□□ 0.26
Vcam1P29533 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.7■□□□□ 0.26
Vcam1P29533 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vcam1P29533 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Vcam1P29533 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.69■□□□□ 0.26
Vcam1P29533 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Gm15393-201ENSMUST00000120499 219 ntBASIC16.69■□□□□ 0.26
Vcam1P29533 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.69■□□□□ 0.26
Vcam1P29533 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Gm28631-201ENSMUST00000190740 334 ntBASIC16.69■□□□□ 0.26
Vcam1P29533 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Vcam1P29533 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Vcam1P29533 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Vcam1P29533 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Vcam1P29533 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vcam1P29533 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Vcam1P29533 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms