Protein–RNA interactions for Protein: P09633

Hoxc9, Homeobox protein Hox-C9, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc9P09633 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hoxc9P09633 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hoxc9P09633 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Hoxc9P09633 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC18.82■□□□□ 0.6
Hoxc9P09633 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Gm21470-201ENSMUST00000187680 696 ntBASIC18.82■□□□□ 0.6
Hoxc9P09633 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Hoxc9P09633 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hoxc9P09633 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Gm12341-201ENSMUST00000119724 503 ntBASIC18.81■□□□□ 0.6
Hoxc9P09633 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Hoxc9P09633 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hoxc9P09633 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC18.8■□□□□ 0.6
Hoxc9P09633 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.8■□□□□ 0.6
Hoxc9P09633 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Hoxc9P09633 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC18.8■□□□□ 0.6
Hoxc9P09633 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC18.8■□□□□ 0.6
Hoxc9P09633 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Hoxc9P09633 CT030657.3-201ENSMUST00000222707 1200 ntBASIC18.8■□□□□ 0.6
Hoxc9P09633 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Hoxc9P09633 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hoxc9P09633 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Hoxc9P09633 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Mir7085-201ENSMUST00000184353 66 ntBASIC18.79■□□□□ 0.6
Hoxc9P09633 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Hoxc9P09633 Gm42632-201ENSMUST00000201707 2411 ntBASIC18.79■□□□□ 0.6
Hoxc9P09633 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hoxc9P09633 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc9P09633 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc9P09633 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Hoxc9P09633 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hoxc9P09633 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Hoxc9P09633 Gm12960-201ENSMUST00000120017 1066 ntBASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms