Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Vti1aO89116 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Vti1aO89116 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm13223-201ENSMUST00000118609 747 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Gm15693-201ENSMUST00000120470 637 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm5866-201ENSMUST00000177881 973 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm5745-201ENSMUST00000183748 313 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC15.74■□□□□ 0.11
Vti1aO89116 Gm6888-201ENSMUST00000221983 706 ntBASIC15.74■□□□□ 0.11
Vti1aO89116 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC15.74■□□□□ 0.11
Vti1aO89116 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Vti1aO89116 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.73■□□□□ 0.11
Vti1aO89116 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
Vti1aO89116 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.73■□□□□ 0.11
Vti1aO89116 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Mir8102-201ENSMUST00000184148 139 ntBASIC15.73■□□□□ 0.11
Vti1aO89116 Gm18049-201ENSMUST00000208909 581 ntBASIC15.73■□□□□ 0.11
Vti1aO89116 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Vti1aO89116 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.73■□□□□ 0.11
Vti1aO89116 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.73■□□□□ 0.11
Vti1aO89116 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.73■□□□□ 0.11
Vti1aO89116 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.73■□□□□ 0.11
Vti1aO89116 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Vti1aO89116 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Vti1aO89116 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
Vti1aO89116 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Gm27437-201ENSMUST00000183429 107 ntBASIC15.72■□□□□ 0.11
Vti1aO89116 Gm27920-201ENSMUST00000183953 96 ntBASIC15.72■□□□□ 0.11
Vti1aO89116 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC15.72■□□□□ 0.11
Vti1aO89116 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Vti1aO89116 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Vti1aO89116 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms