Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.31□□□□□ -0.12
Cbx4O55187 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.31□□□□□ -0.12
Cbx4O55187 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.31□□□□□ -0.12
Cbx4O55187 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.31□□□□□ -0.12
Cbx4O55187 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.31□□□□□ -0.12
Cbx4O55187 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cbx4O55187 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.31□□□□□ -0.12
Cbx4O55187 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cbx4O55187 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Cbx4O55187 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Gm14494-201ENSMUST00000118786 435 ntBASIC14.3□□□□□ -0.12
Cbx4O55187 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.3□□□□□ -0.12
Cbx4O55187 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Cbx4O55187 Mir3113-201ENSMUST00000175478 76 ntBASIC14.3□□□□□ -0.12
Cbx4O55187 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.3□□□□□ -0.12
Cbx4O55187 Gm2451-201ENSMUST00000199447 999 ntBASIC14.3□□□□□ -0.12
Cbx4O55187 Gm10290-201ENSMUST00000200451 999 ntBASIC14.3□□□□□ -0.12
Cbx4O55187 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cbx4O55187 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cbx4O55187 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Cbx4O55187 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cbx4O55187 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.3□□□□□ -0.12
Cbx4O55187 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.3□□□□□ -0.12
Cbx4O55187 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cbx4O55187 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Cbx4O55187 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC14.29□□□□□ -0.12
Cbx4O55187 Gm4995-201ENSMUST00000117247 432 ntBASIC14.29□□□□□ -0.12
Cbx4O55187 Gm12892-201ENSMUST00000117367 1146 ntBASIC14.29□□□□□ -0.12
Cbx4O55187 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Gm5867-201ENSMUST00000063197 592 ntBASIC14.29□□□□□ -0.12
Cbx4O55187 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Cbx4O55187 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Cbx4O55187 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cbx4O55187 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Cbx4O55187 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cbx4O55187 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms