Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Gm17968-201ENSMUST00000194902 784 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Gm10154-201ENSMUST00000084445 354 ntBASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm16198-201ENSMUST00000118766 670 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm17271-201ENSMUST00000165535 355 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm44492-201ENSMUST00000197012 141 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm45747-201ENSMUST00000212203 999 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
Prpf40aQ9R1C7 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Prpf40aQ9R1C7 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Prpf40aQ9R1C7 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Prpf40aQ9R1C7 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Prpf40aQ9R1C7 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Prpf40aQ9R1C7 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Prpf40aQ9R1C7 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms