Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Gm27437-201ENSMUST00000183429 107 ntBASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Gm17837-201ENSMUST00000186435 985 ntBASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ccdc3Q9D6Y1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Gm8410-201ENSMUST00000117225 605 ntBASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Gm15693-201ENSMUST00000120470 637 ntBASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Gm27618-201ENSMUST00000183671 60 ntBASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Gm5745-201ENSMUST00000183748 313 ntBASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ccdc3Q9D6Y1 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Gm5866-201ENSMUST00000177881 973 ntBASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ccdc3Q9D6Y1 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms