Protein–RNA interactions for Protein: Q9D3E6

Stag1, Cohesin subunit SA-1, mousemouse

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Stag1Q9D3E6 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Gm15653-201ENSMUST00000119247 907 ntBASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Stag1Q9D3E6 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Stag1Q9D3E6 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Stag1Q9D3E6 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Stag1Q9D3E6 Gm3365-201ENSMUST00000216296 1480 ntBASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Gm15321-201ENSMUST00000121290 288 ntBASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.39■□□□□ 0.37
Stag1Q9D3E6 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Stag1Q9D3E6 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Gtpbp10-211ENSMUST00000198799 648 ntBASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Gm45453-201ENSMUST00000211758 853 ntBASIC17.38■□□□□ 0.37
Stag1Q9D3E6 AC135669.1-201ENSMUST00000213585 412 ntBASIC17.38■□□□□ 0.37
Stag1Q9D3E6 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Stag1Q9D3E6 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Gm11424-201ENSMUST00000121929 829 ntBASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Gm29667-201ENSMUST00000190817 490 ntBASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Gm43703-201ENSMUST00000200523 763 ntBASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.37■□□□□ 0.37
Stag1Q9D3E6 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Stag1Q9D3E6 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms